SNP Profiles matching UF 613

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 Key

 1234567891011121314
_Input profile
CGATCCTTCTACCCAGCCATAGAAACCT
1._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
2._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
3._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
4._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
5._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
6._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
7._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
8._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
9._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
10._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
11._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
12._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
13._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
14._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
15._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
16._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
17._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
18._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
19._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
20._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
21._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
22._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
23._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
24._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
25._RUQ_1573
__CCTTCTACCCAGCCAT_AAACCT
26._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
27._RUQ_1573
CGATCCTTCTACCCAGCCATAGAAACCT
28._UF_613
CGATCCTTCTAC_AGCCATAGAAACCT
 1516171819202122232425262728
_Input profile
GTCCACCTTTGGCTTTGGATTTAGCTAG
1._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
2._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
3._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
4._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
5._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
6._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
7._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
8._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
9._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
10._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
11._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
12._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
13._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
14._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
15._GC-05-057-2-08
GTCCACCTTTGGCTTTGGATTTAGCTAG
16._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
17._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
18._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
19._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
20._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
21._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
22._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
23._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
24._GC-08-046-1-57
GTCCACCTTTGGCTTTGGATTTAGCTAG
25._RUQ_1573
GTCCACCTTTGGCT____AGCT_
26._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
27._RUQ_1573
GTCCACCTTTGGCTTTGGATTTAGCTAG
28._UF_613
GTCCACCTTTGGCTTTGGATTTAGCTAG
 2930313233343536373839   
_Input profile
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
1._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
2._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
3._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
4._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
5._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
6._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
7._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
8._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
9._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
10._UF_613
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
11._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
12._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
13._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
14._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
15._GC-05-057-2-08
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
16._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
17._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
18._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
19._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
20._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
21._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
22._GC-08-046-1-57
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
23._UF_613
ATCTCTGTCCAA_CTGGAGCTX_XX_XX_X
24._GC-08-046-1-57
ATCTCTGTCCAA_CTGGAGCTX_XX_XX_X
25._RUQ_1573
___GT___CTGGAG_X_XX_XX_X
26._UF_613
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
27._RUQ_1573
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
28._UF_613
AT_CTGTCCACCTCTGGAGTTX_XX_XX_X

Input profile: UF_613

 
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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

1._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

3._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

4._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

5._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

6._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

7._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

8._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

9._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

10._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

11._UF_613 GC-05-057-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._UF_613 GC-05-057-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._UF_613 GC-05-057-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._UF_613 GC-05-057-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._UF_613 GC-05-057-2-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

16._UF_613 GC-08-046-1-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._UF_613 GC-08-046-1-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

18._UF_613 GC-08-046-1-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

19._UF_613 GC-08-046-1-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._UF_613 GC-08-046-1-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._UF_613 GC-08-046-1-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._UF_613 GC-08-046-1-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

24._UF_613 GC-08-046-1-57

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._UF_613 RUQ_1573

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._UF_613

98.7 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_613 RUQ_1573

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._UF_613

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520